DNA Microscope Sees ‘Through the Eyes of the Cell’

From the NYT by
By Knvul Sheikh

Peering inside cells has been an integral part of biology ever since the 17th century, when cells were discovered under a microscope. But even with advances in light and electron microscopy, researchers who want to understand where various molecules are inside a cell — and thus how cells like neurons, immune cells and tumors differ from one another — can glean only so much .

Now, scientists have come up with a new way to capture what’s going on in there. The approach, called DNA microscopy, uses simple chemical reactions essentially to map a cell’s interior, highlighting the contents and indicating exactly where everything can be found.

The technique, described Thursday in the journal Cell, also reveals a wealth of genetic information not accessible with traditional microscopy tools: which immune receptor genes are turned on or off, say, and whether cells are healthy or full of disease-causing mutations.

“DNA microscopy captures both genetic and spatial information simultaneously,” said Joshua Weinstein, a postdoctoral researcher at the Broad Institute of M.I.T. and Harvard and the lead author of the paper. “That’s what’s really beautiful about it.”

A scientist starts by pipetting readily available chemical reagents onto a sample. This causes small, synthetic DNA tags to latch on to biomolecules inside the cells. A subsequent reaction leads each tag to generate copies, which emanate outward like radio signals from a cellphone tower.

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